Return likelihood profiles for binary covariates special case

binary_likelihood_profs(
  best_pars,
  max_loglike,
  mc_samples_summary,
  alpha = 0.05,
  multiple_outside_transmissions = FALSE
)

Arguments

best_pars	vector of MLE
max_loglike	loglike value from MLE
mc_samples_summary	tree summaries, output from `sample_mc_binary_cov`
alpha	\(alpha\)-value to make a (1-\(alpha\))% CI
multiple_outside_transmissions	logical indicating to use base model or multiple outside transmissions model.

Value

matrix of dimension (length of best_pars) x 3 where the columns are the best parameter estimate, the lower CI (lower) and upper CI (upper) @export