Take external aggregate data and put it in a format used in this package

Take external aggregate data and put it in a format used in this package

# S3 method for dcm
fortify_aggregate(data, states, package_source = NULL)

Arguments

data	output from external source package. See details
states	names of states we want aggregate totals of at each time
package_source	optional argument to include the package from which the output is derived from, which helps with the fortify function when outputs are of generic classes such as list or data.frame

Value

a data frame with the following columns

t

time

Xk

columns X0, ..., X_K. which are numeric

Details

This function converts external data sources (we currently support output from the EpiModel and pomp R packages), which is already aggregated and puts it in a format that can be used by our exploring functions.

Examples

## For dcm
out <- fortify_aggregate(EpiModel_det)
#> New names:
#> * sim -> sim...1
#> * sim -> sim...3
#> * sim -> sim...5
head(out)
#> # A tibble: 6 x 6
#>       t orig_t sim      X0    X1    X2
#>   <int>  <dbl> <fct> <dbl> <dbl> <dbl>
#> 1     1      1 run1   900   100   0   
#> 2     2      2 run1   885.  113.  2.13
#> 3     3      3 run1   868.  128.  4.53
#> 4     4      4 run1   849.  143.  7.24
#> 5     5      5 run1   829.  161. 10.3 
#> 6     6      6 run1   807.  180. 13.7