pomp_sir Example output from the pomp package.

Source: R/data.R

Specifcially, this data is made from the SIR example found from this pomp vignette. The output format for the data is data.frame. This data set is a data frame with dimensions 52100 x 7. Each row consists of the time, number of individuals in each state, and simulation ID. The birth and death rates have been set to zero.

pomp_sir

Format

A 52100 x 7 data.frame where each row is a time and the number of individuals in each state at that time. The columns include

time

possibly continuous, greater than 0

.id

the simulation ID

S

the number of Susceptible at the given time

I

the number of Infectious at the given time

R

the number of Recovered at the given time

H

the number of new incidence

cases

the number of cases recorded within a given reporting interval

Examples

## Show the first 6 lines
head(pomp_sir)
#>   time .id   S  I R H cases
#> 1    0   1 950 50 0 0   NaN
#> 2    0   2 950 50 0 0   NaN
#> 3    0   3 950 50 0 0   NaN
#> 4    0   4 950 50 0 0   NaN
#> 5    0   5 950 50 0 0   NaN
#> 6    0   6 950 50 0 0   NaN