The data is an example of simulation output from functions from the pomp package by King et al. The code for how this data was generated can be found in the data-raw folder. We also make available the other possible output formats from pomp. See pomp_df and pomp_arr
pomp_pomp
The object is a 'pompList' which contains essentially all information from a pomp simulation.
#> Formal class 'pompList' [package "pomp"] with 1 slot #> ..@ .Data:List of 6 #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 946 52 2 4 944 54 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list() #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 947 51 2 3 944 51 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list() #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 943 56 1 7 939 60 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list() #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 946 53 1 4 942 57 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list() #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 948 52 0 2 943 56 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list() #> .. ..$ :Formal class 'pomp' [package "pomp"] with 19 slots #> .. .. .. ..@ data : num [1, 1:101] NaN NaN NaN NaN NaN NaN NaN NaN NaN NaN ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr "cases" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ times : num [1:101] 0 1 2 3 4 5 6 7 8 9 ... #> .. .. .. ..@ t0 : num 0 #> .. .. .. ..@ timename : chr "time" #> .. .. .. ..@ rinit :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rinit" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rinit" #> .. .. .. ..@ rprocess :Formal class 'eulerRprocPlugin' [package "pomp"] with 6 slots #> .. .. .. .. .. ..@ delta.t : num 1 #> .. .. .. .. .. ..@ csnippet: logi TRUE #> .. .. .. .. .. ..@ slotname: chr "step.fun" #> .. .. .. .. .. ..@ type : int 3 #> .. .. .. .. .. ..@ step.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr "__pomp_stepfn" #> .. .. .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "step.fun" #> .. .. .. .. .. ..@ rate.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "rate.fun" #> .. .. .. ..@ dprocess :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprocess" #> .. .. .. ..@ rmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_rmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int [1:4] 0 1 2 3 #> .. .. .. .. .. ..@ paramindex: int [1:9] 2 3 5 1 0 4 6 7 8 #> .. .. .. .. .. ..@ obsindex : int 0 #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rmeasure" #> .. .. .. ..@ dmeasure :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr "__pomp_dmeasure" #> .. .. .. .. .. ..@ PACKAGE : chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..@ mode : int 3 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dmeasure" #> .. .. .. ..@ rprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "rprior" #> .. .. .. ..@ dprior :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. ..@ purpose : chr "dprior" #> .. .. .. ..@ skeleton :Formal class 'skelPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ csnippet: logi FALSE #> .. .. .. .. .. ..@ type : int 0 #> .. .. .. .. .. ..@ skel.fn :Formal class 'pomp_fun' [package "pomp"] with 14 slots #> .. .. .. .. .. .. .. ..@ R.fun :function (...) #> .. .. .. .. .. .. .. ..@ native.fun: chr(0) #> .. .. .. .. .. .. .. ..@ PACKAGE : chr(0) #> .. .. .. .. .. .. .. ..@ mode : int 0 #> .. .. .. .. .. .. .. ..@ address :<externalptr> #> .. .. .. .. .. .. .. ..@ statenames: chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. .. .. ..@ paramnames: chr [1:9] "gamma" "mu" "theta" "Beta" ... #> .. .. .. .. .. .. .. ..@ obsnames : chr "cases" #> .. .. .. .. .. .. .. ..@ covarnames: chr(0) #> .. .. .. .. .. .. .. ..@ stateindex: int(0) #> .. .. .. .. .. .. .. ..@ paramindex: int(0) #> .. .. .. .. .. .. .. ..@ obsindex : int(0) #> .. .. .. .. .. .. .. ..@ covarindex: int(0) #> .. .. .. .. .. .. .. ..@ purpose : chr "skeleton" #> .. .. .. ..@ partrans :Formal class 'partransPlugin' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ has : logi FALSE #> .. .. .. .. .. ..@ to : NULL #> .. .. .. .. .. ..@ from: NULL #> .. .. .. ..@ params : Named num [1:9] 1000 0.1 0.03 0 0 0 950 50 0 #> .. .. .. .. ..- attr(*, "names")= chr [1:9] "popsize" "Beta" "gamma" "mu" ... #> .. .. .. ..@ states : num [1:4, 1:101] 950 50 0 0 948 51 1 2 942 54 ... #> .. .. .. .. ..- attr(*, "dimnames")=List of 2 #> .. .. .. .. .. ..$ : chr [1:4] "S" "I" "R" "H" #> .. .. .. .. .. ..$ : NULL #> .. .. .. ..@ covar :Formal class 'covartable' [package "pomp"] with 3 slots #> .. .. .. .. .. ..@ times: num(0) #> .. .. .. .. .. ..@ table: num[0 , 0 ] #> .. .. .. .. .. ..@ order: int 1 #> .. .. .. ..@ accumvars: chr "H" #> .. .. .. ..@ solibs :List of 1 #> .. .. .. .. ..$ :List of 3 #> .. .. .. .. .. ..$ name: chr "pomp_39d2e6d6d1c74c96cbaa536ecd6833bb" #> .. .. .. .. .. ..$ dir : NULL #> .. .. .. .. .. ..$ src : chr "/* pomp C snippet file: pomp_39d2e6d6d1c74c96cbaa536ecd6833bb */\n/* Time: 2019-10-29 11:37:03.381 -0400 */\n/*"| __truncated__ #> .. .. .. ..@ userdata : list()